Summary
To perform a Super Jump, simply tap one of the three Down positions on the joystick for a fraction of a second before hitting any of the three Up directions. Remember: the Down position must be tapped before Jumping. If you are holding Down on the joystick and immediately shift to Up, you'll just perform a regular Jump. Down must only be pressed for a fraction of a second.
The Power of Super Jumping
The Super Jump is what has set the Marvel Series apart from every other Fighting Game series in existence. In most Fighting Games, you are only allowed to jump as high as one screen's worth of height. In other games where you are allowed to jump higher, it usually ends up being an alternate form of movement or just another means by which to try and approach your enemy. In other words, it's just an option.
In Marvel Vs. Capcom 3, Super Jumping is a way of life. In fact, you may spend a good portion of your game time Super Jumping around. Depending on your characters, it wouldn't shock me at all to have a character that spends more than 50% of their time Super Jumping into the air.
And why is that? It's because Super Jumps contain a lot of natural advantages. While on the ground, you have two different directions you must Block to properly defend all attacks. Blocking the wrong way will cause you to start getting hit. And while you can do that in a regular Jump as well, you are committed to the direction you are Jumping. For example, a Forward Jump will have you moving forward with that Jump the entire time you are in the air.
Super Jumping, first of all, removes any issues of directional Blocking: 100% of every attack can be Blocked in the same direction during a Super Jump, which makes for a much tighter defense that is tougher to crack.
Strategy Corner
CRACKING THE DEFENSE OF A SUPER JUMPER
Super Jumping also allows you to guide your character in the air ever so slightly after they've started. The initial trajectory they go into is different depending on which of the three up directions you press on the joystick, but once in the air, you can alter the trajectory ever so subtly. If you Super Jump forward, you'll never be able to start drifting backwards. You can just slow your forward momentum down until it stops. If you Super Jump straight up, you can glide left or right a maximum distance that's a bit father than a regular Jump's distance, but you start gliding very slowly and pick up speed more as you are coming down. If you Super Jump backwards, you can eventually get to a point where you are moving forward by the time you land.
Lastly, and most obviously, Super Jumping makes you jump at over twice the height of a regular Jump which means, if your opponent is still grounded, you have a distinct positional advantage of being at higher ground. Characters like Doctor Doom can make a living off of Super Jumping and raining Photon Shots down on their opponent. Not only that, but the viewpoint of the screen follows you up, and your grounded opponent will scroll off the bottom of the screen, represented only by a bubble that reads "P1" or "P2" with an arrow pointing to where they are.
Super Jumping Weaknesses?
The main weakness of a Super Jump is that you cannot call Assists while in a Super Jump. This means once you take to the air for a Super Jump, you are on your own until you land. What most players tend to do, if they want to cover themselves, is to call an Assist before they Super Jump.
Also, the other small weakness of a Super Jump is that, well, what goes up must come down. You do eventually have to land and it's those moments that your opponent can try to take advantage of you by pinning you to the ground with an array of attacks, forcing you to play defense at a level much less safe than being in the air.